If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ), 'gf_id' => 'HOM05D000620', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000620' ), 'data_identifier' => 'HOM05D000620', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000620', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '922', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p26980' => 'bna', 'A02p44050' => 'bna', 'A03p65690' => 'bna', 'A04p17150' => 'bna', 'A05p07230' => 'bna', 'A06p05110' => 'bna', 'A06p32520' => 'bna', 'A06p44750' => 'bna', 'A08p35350' => 'bna', 'A10p17960' => 'bna', 'Aa31LG1G12670' => 'aar', 'Aa31LG5G20690' => 'aar', 'Aa31sc537G10' => 'aar', 'Aa31sc80G120' => 'aar', 'Actinidia01456' => 'ach', 'Actinidia02272' => 'ach', 'Actinidia06761' => 'ach', 'Actinidia07151' => 'ach', 'Actinidia07152' => 'ach', 'Actinidia10260' => 'ach', 'Actinidia11930' => 'ach', 'Actinidia19261' => 'ach', 'Actinidia20445' => 'ach', 'Actinidia22447' => 'ach', 'Actinidia24114' => 'ach', 'Actinidia24115' => 'ach', 'Actinidia32444' => 'ach', 'Actinidia36385' => 'ach', 'Actinidia38858' => 'ach', 'Ah.01g003040' => 'amhyb', 'Ah.01g004000' => 'amhyb', 'Ah.02g129250' => 'amhyb', 'Ah.03g134410' => 'amhyb', 'Ah.04g165740' => 'amhyb', 'Ah.04g166280' => 'amhyb', 'Ah.04g166310' => 'amhyb', 'Ah.04g166320' => 'amhyb', 'Ah.06g182170' => 'amhyb', 'Ah.06g182860' => 'amhyb', 'Ah.11g041120' => 'amhyb', 'AL1G18390' => 'aly', 'AL1G18400' => 'aly', 'AL4G12220' => 'aly', 'AL4G36280' => 'aly', 'AL5G35860' => 'aly', 'AL7G12770' => 'aly', 'AL8G23540' => 'aly', 'AL8G37300' => 'aly', 'AL8G43310' => 'aly', 'Aqoxy1G01212' => 'aox', 'Aqoxy1G01548' => 'aox', 'Aqoxy6G00622' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74W6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.81QCRK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.86STVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90KKXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.924ZJS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B47L6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CFHF82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CVXT9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVEM8G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PMPR50' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6Y8PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3CM6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4WR0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TVE9PI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKMX5Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z63BXE' => 'arhy', 'AT1G08050' => 'ath', 'AT2G22680' => 'ath', 'AT2G38970' => 'ath', 'AT3G54780' => 'ath', 'AT4G37890' => 'ath', 'AT5G49665' => 'ath', 'AT5G60710' => 'ath', 'AT5G65683' => 'ath', 'ATR0048G042' => 'atr', 'ATR0315G061' => 'atr', 'ATR0751G207' => 'atr', 'ATR0763G013' => 'atr', 'ATR0767G003' => 'atr', 'Atru.chr1.2211' => 'acertr', 'Atru.chr12.798' => 'acertr', 'Atru.chr13.937' => 'acertr', 'Atru.chr3.1141' => 'acertr', 'Atru.chr3.3602' => 'acertr', 'AUR62003428' => 'cqu', 'AUR62005880' => 'cqu', 'AUR62010293' => 'cqu', 'AUR62020329' => 'cqu', 'AUR62020331' => 'cqu', 'AUR62020333' => 'cqu', 'AUR62022781' => 'cqu', 'AUR62025905' => 'cqu', 'AUR62029413' => 'cqu', 'AUR62032873' => 'cqu', 'AUR62035412' => 'cqu', 'AUR62035698' => 'cqu', 'AUR62043341' => 'cqu', 'AUR62044317' => 'cqu', 'AUR62044469' => 'cqu', 'BcaB01g03638' => 'bca', 'BcaB02g09149' => 'bca', 'BcaB03g13354' => 'bca', 'BcaB05g22663' => 'bca', 'BcaB05g23236' => 'bca', 'BcaB05g23237' => 'bca', 'BcaB06g27816' => 'bca', 'BcaB06g28151' => 'bca', 'BcaB08g36373' => 'bca', 'BcaC01g02811' => 'bca', 'BcaC01g02846' => 'bca', 'BcaC02g08622' => 'bca', 'BcaC02g12029' => 'bca', 'BcaC03g13943' => 'bca', 'BcaC03g16443' => 'bca', 'BcaC03g18349' => 'bca', 'BcaC04g19734' => 'bca', 'BcaC05g24720' => 'bca', 'BcaC06g31345' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00120' => 'bna', 'BolC1t03398H' => 'bol', 'BolC2t07225H' => 'bol', 'BolC2t12493H' => 'bol', 'BolC3t18266H' => 'bol', 'BolC4t22461H' => 'bol', 'BolC4t26768H' => 'bol', 'BolC5t29367H' => 'bol', 'BolC7t43688H' => 'bol', 'BolC7t46685H' => 'bol', 'BolC9t58222H' => 'bol', 'BraA02t05708Z' => 'bra', 'BraA02t07712Z' => 'bra', 'BraA02t09328Z' => 'bra', 'BraA03t15619Z' => 'bra', 'BraA04t17344Z' => 'bra', 'BraA05t19687Z' => 'bra', 'BraA06t23718Z' => 'bra', 'BraA06t26178Z' => 'bra', 'BraA06t27348Z' => 'bra', 'BraA10t43870Z' => 'bra', 'C02p11510' => 'bna', 'C02p42660' => 'bna', 'C02p64280' => 'bna', 'C03p60020' => 'bna', 'C04p08690' => 'bna', 'C04p51970' => 'bna', 'C05p06070' => 'bna', 'C07p31450' => 'bna', 'C07p62710' => 'bna', 'C08p03490' => 'bna', 'C09p53450' => 'bna', 'CAN.G1061.18' => 'can', 'CAN.G1456.12' => 'can', 'CAN.G631.44' => 'can', 'CAN.G675.18' => 'can', 'CAN.G694.89' => 'can', 'CAN.G723.28' => 'can', 'CANSAT01G2032' => 'cansat', 'CANSAT54G2123' => 'cansat', 'CANSAT56G2654' => 'cansat', 'CANSAT56G4351' => 'cansat', 'CANSAT78G0347' => 'cansat', 'CARHR007840' => 'chi', 'CARHR007850' => 'chi', 'CARHR113940' => 'chi', 'CARHR133730' => 'chi', 'CARHR246280' => 'chi', 'CARHR274390' => 'chi', 'CARHR279640' => 'chi', 'CARHR293300' => 'chi', 'Carub.0001s0740' => 'cru', 'Carub.0004s0183' => 'cru', 'Carub.0004s2100' => 'cru', 'Carub.0005s2137' => 'cru', 'Carub.0007s0233' => 'cru', 'Carub.0008s0953' => 'cru', 'Carub.0008s2139' => 'cru', 'Carub.0008s2655' => 'cru', 'Ca_00781_v3' => 'car', 'Ca_01380_v3' => 'car', 'Ca_01396_v3' => 'car', 'Ca_06071_v3' => 'car', 'Ca_10560_v3' => 'car', 'Ca_15546_v3' => 'car', 'Ca_19288_v3' => 'car', 'Ca_22634_v3' => 'car', 'CBR_g23667' => 'cbr', 'CBR_g50925' => 'cbr', 'Cc01_g10900' => 'ccan', 'Cc02_g11250' => 'ccan', 'Cc07_g07770' => 'ccan', 'Cc09_g00110' => 'ccan', 'Cc10_g08180' => 'ccan', 'CDE01G0355' => 'cde', 'CDE02G1351' => 'cde', 'CDE02G2720' => 'cde', 'CDE02G4210' => 'cde', 'CDE03G0169' => 'cde', 'CDE03G0189' => 'cde', 'CDE04G0402' => 'cde', 'CDE04G0674' => 'cde', 'CDE04G1536' => 'cde', 'CDE04G3440' => 'cde', 'CDE06G0551' => 'cde', 'CDE06G1099' => 'cde', 'CDE07G0373' => 'cde', 'CDE07G1646' => 'cde', 'CDE08G1365' => 'cde', 'Cfa000001' => 'cfa', 'Cfa000746' => 'cfa', 'Cfa001657' => 'cfa', 'Cfa005982' => 'cfa', 'Cfa006820' => 'cfa', 'Cfa011297' => 'cfa', 'Cfa021682' => 'cfa', 'Ciclev10014457m.g' => 'ccl', 'Ciclev10014880m.g' => 'ccl', 'CiPaw.01G271500' => 'cil', 'CiPaw.02G173300' => 'cil', 'CiPaw.07G041700' => 'cil', 'CiPaw.07G161000' => 'cil', 'CiPaw.08G146900' => 'cil', 'CiPaw.09G112700' => 'cil', 'CiPaw.10G084700' => 'cil', 'CiPaw.13G116200' => 'cil', 'CiPaw.14G085000' => 'cil', 'ClCG01G013530' => 'cla', 'ClCG01G021040' => 'cla', 'ClCG02G021280' => 'cla', 'ClCG08G007580' => 'cla', 'ClCG08G011900' => 'cla', 'COL.COLO4_11670' => 'col', 'COL.COLO4_18306' => 'col', 'COL.COLO4_18307' => 'col', 'COL.COLO4_28412' => 'col', 'COL.COLO4_28413' => 'col', 'COL.COLO4_30924' => 'col', 'COL.COLO4_31965' => 'col', 'COL.COLO4_31966' => 'col', 'COL.COLO4_35334' => 'col', 'Cpa.g.sc129.24' => 'cpa', 'Cpa.g.sc17.41' => 'cpa', 'Cpa.g.sc1726.1' => 'cpa', 'Cpa.g.sc27.188' => 'cpa', 'Cpa.g.sc53.90' => 'cpa', 'Cpa.g.sc65.9' => 'cpa', 'Cre09.g395843' => 'cre', 'Cre12.g500550' => 'cre', 'CsaV3_1G013930' => 'csa', 'CsaV3_2G030520' => 'csa', 'CsaV3_6G014030' => 'csa', 'CsaV3_6G036530' => 'csa', 'CsaV3_6G044670' => 'csa', 'CsaV3_6G048040' => 'csa', 'CSS0001261' => 'camsi', 'CSS0002357' => 'camsi', 'CSS0002591' => 'camsi', 'CSS0007781' => 'camsi', 'CSS0012787' => 'camsi', 'CSS0017051' => 'camsi', 'CSS0017198' => 'camsi', 'CSS0017643' => 'camsi', 'CSS0017667' => 'camsi', 'CSS0017835' => 'camsi', 'CSS0018147' => 'camsi', 'CSS0021690' => 'camsi', 'CSS0024465' => 'camsi', 'CSS0025667' => 'camsi', 'CSS0034256' => 'camsi', 'CSS0034308' => 'camsi', 'CSS0038599' => 'camsi', 'CSS0048090' => 'camsi', 'CSS0048700' => 'camsi', 'CSS0050049' => 'camsi', 'DCAR_003579' => 'dca', 'DCAR_003583' => 'dca', 'DCAR_003804' => 'dca', 'DCAR_010764' => 'dca', 'DCAR_015298' => 'dca', 'DCAR_016553' => 'dca', 'DCAR_018794' => 'dca', 'DCAR_019099' => 'dca', 'DCAR_019333' => 'dca', 'DCAR_029340' => 'dca', 'DCAR_030823' => 'dca', 'Dinv14847' => 'din', 'Dinv22017' => 'din', 'Dinv26995' => 'din', 'Dinv31312' => 'din', 'Dinv32721' => 'din', 'Dinv35486' => 'din', 'Dinv36426' => 'din', 'Dinv36985' => 'din', 'Dinv44890' => 'din', 'Duzib041G0423' => 'dzi', 'Duzib093G0329' => 'dzi', 'Duzib114G0728' => 'dzi', 'Duzib116G0102' => 'dzi', 'Duzib128G0899' => 'dzi', 'Duzib147G1699' => 'dzi', 'Duzib150G0259' => 'dzi', 'Duzib160G0886' => 'dzi', 'Duzib168G1791' => 'dzi', 'Duzib170G0735' => 'dzi', 'Duzib187G1551' => 'dzi', 'Duzib192G0104' => 'dzi', 'Duzib235G0486' => 'dzi', 'Duzib235G1516' => 'dzi', 'Duzib264G0819' => 'dzi', 'ECA232G1184' => 'eca', 'ECA232G1251' => 'eca', 'ECA232G1385' => 'eca', 'ECA232G2531' => 'eca', 'ECA232G2702' => 'eca', 'ECA233G5133' => 'eca', 'ECA234G4351' => 'eca', 'ECA238G0563' => 'eca', 'ECA238G2333' => 'eca', 'ECA246G3097' => 'eca', 'EL10Ac1g02238' => 'bvu', 'EL10Ac2g03299' => 'bvu', 'EL10Ac4g07663' => 'bvu', 'EL10Ac4g07666' => 'bvu', 'EL10Ac4g07671' => 'bvu', 'EL10Ac4g08006' => 'bvu', 'EL10Ac4g08010' => 'bvu', 'EL10Ac6g13297' => 'bvu', 'EL10Ac6g15428' => 'bvu', 'EL10Ac9g22549' => 'bvu', 'Eucgr.D00969' => 'egr', 'Eucgr.F00460' => 'egr', 'Eucgr.F02173' => 'egr', 'Eucgr.I00623' => 'egr', 'FAN01G2679' => 'fan', 'FAN03G2001' => 'fan', 'FAN06G3165' => 'fan', 'FAN10G2169' => 'fan', 'FAN10G3653' => 'fan', 'FAN11G1224' => 'fan', 'FAN14G0541' => 'fan', 'FAN16G0171' => 'fan', 'FAN16G0208' => 'fan', 'FAN16G0317' => 'fan', 'FAN16G0421' => 'fan', 'FAN16G0581' => 'fan', 'FAN16G1899' => 'fan', 'FAN16G2208' => 'fan', 'FAN16G2309' => 'fan', 'FAN16G2435' => 'fan', 'FAN16G3324' => 'fan', 'FAN21G0841' => 'fan', 'FAN21G1176' => 'fan', 'FAN21G2332' => 'fan', 'FAN21G2519' => 'fan', 'FAN21G3215' => 'fan', 'FAN21G3339' => 'fan', 'FAN23G1500' => 'fan', 'FAN25G0430' => 'fan', 'FAN25G0601' => 'fan', 'FAN25G1999' => 'fan', 'FAN25G3070' => 'fan', 'FAN25G3504' => 'fan', 'FAN25G3601' => 'fan', 'FAN25G3862' => 'fan', 'FAN28G2470' => 'fan', 'FvH4_1g18891' => 'fve', 'FvH4_3g00090' => 'fve', 'FvH4_3g10330' => 'fve', 'FvH4_3g11690' => 'fve', 'FvH4_3g11691' => 'fve', 'FvH4_3g11692' => 'fve', 'FvH4_3g11693' => 'fve', 'FvH4_3g11740' => 'fve', 'FvH4_3g11750' => 'fve', 'FvH4_3g11770' => 'fve', 'FvH4_3g11771' => 'fve', 'FvH4_3g11772' => 'fve', 'FvH4_3g11780' => 'fve', 'FvH4_3g31730' => 'fve', 'FvH4_5g33780' => 'fve', 'FvH4_7g19190' => 'fve', 'Glyma.01G019300' => 'gma', 'Glyma.01G097900' => 'gma', 'Glyma.02G218200' => 'gma', 'Glyma.04G089851' => 'gma', 'Glyma.06G091651' => 'gma', 'Glyma.07G270000' => 'gma', 'Glyma.08G273400' => 'gma', 'Glyma.09G017200' => 'gma', 'Glyma.09G203400' => 'gma', 'Glyma.10G210051' => 'gma', 'Glyma.11G197001' => 'gma', 'Glyma.12G077333' => 'gma', 'Glyma.12G175351' => 'gma', 'Glyma.13G324534' => 'gma', 'Glyma.14G185600' => 'gma', 'Glyma.15G122900' => 'gma', 'Glyma.20G180551' => 'gma', 'Gohir.A02G146600' => 'ghi', 'Gohir.A05G104900' => 'ghi', 'Gohir.A05G215800' => 'ghi', 'Gohir.A06G029500' => 'ghi', 'Gohir.A06G202700' => 'ghi', 'Gohir.A08G199200' => 'ghi', 'Gohir.A10G047200' => 'ghi', 'Gohir.A10G204900' => 'ghi', 'Gohir.A11G209500' => 'ghi', 'Gohir.A13G021800' => 'ghi', 'Gohir.D03G033900' => 'ghi', 'Gohir.D05G104700' => 'ghi', 'Gohir.D05G218900' => 'ghi', 'Gohir.D06G028500' => 'ghi', 'Gohir.D06G219000' => 'ghi', 'Gohir.D08G216600' => 'ghi', 'Gohir.D10G048500' => 'ghi', 'Gohir.D10G213100' => 'ghi', 'Gohir.D11G213700' => 'ghi', 'Gohir.D13G022400' => 'ghi', 'Gorai.003G035600' => 'gra', 'Gorai.010G247300' => 'gra', 'Gorai.011G051600' => 'gra', 'GSVIVG01003713001' => 'vvi', 'GSVIVG01007063001' => 'vvi', 'GSVIVG01009240001' => 'vvi', 'GSVIVG01013615001' => 'vvi', 'GSVIVG01016259001' => 'vvi', 'GSVIVG01019190001' => 'vvi', 'GSVIVG01025213001' => 'vvi', 'HanXRQChr03g0080931' => 'han', 'HanXRQChr07g0194951' => 'han', 'HanXRQChr09g0247301' => 'han', 'HanXRQChr09g0259281' => 'han', 'HanXRQChr09g0262991' => 'han', 'HanXRQChr10g0300561' => 'han', 'HanXRQChr11g0324041' => 'han', 'HanXRQChr12g0377101' => 'han', 'HanXRQChr14g0456791' => 'han', 'HanXRQChr15g0474061' => 'han', 'HanXRQChr15g0484431' => 'han', 'HanXRQChr16g0515261' => 'han', 'HanXRQChr17g0558261' => 'han', 'Haze_04865' => 'cav', 'Haze_07056' => 'cav', 'Haze_18603' => 'cav', 'Haze_18604' => 'cav', 'Haze_18654' => 'cav', 'Hma1.2p1_0057F.1_g031975' => 'hma', 'Hma1.2p1_0080F.1_g042180' => 'hma', 'Hma1.2p1_0299F.1_g117760' => 'hma', 'Hma1.2p1_0394F.1_g143440' => 'hma', 'Hma1.2p1_0395F.1_g143610' => 'hma', 'Hma1.2p1_3551F.1_g336710' => 'hma', 'HPP92_008609' => 'vpl', 'HPP92_012692' => 'vpl', 'HPP92_020470' => 'vpl', 'HPP92_026163' => 'vpl', 'Hund01511' => 'sun', 'Hund05230' => 'sun', 'Hund12060' => 'sun', 'Hund23186' => 'sun', 'Hund23281' => 'sun', 'Lalb_Chr01g0004431' => 'lal', 'Lalb_Chr02g0142051' => 'lal', 'Lalb_Chr03g0027501' => 'lal', 'Lalb_Chr05g0216161' => 'lal', 'Lalb_Chr06g0162251' => 'lal', 'Lalb_Chr08g0242691' => 'lal', 'Lalb_Chr14g0374561' => 'lal', 'Lalb_Chr15g0088421' => 'lal', 'Lalb_Chr16g0381421' => 'lal', 'Lalb_Chr18g0057541' => 'lal', 'Lalb_Chr21g0306031' => 'lal', 'Lalb_Chr22g0350301' => 'lal', 'Lalb_Chr23g0269861' => 'lal', 'Lalb_Chr24g0394741' => 'lal', 'Lj1A201T37' => 'lonja', 'Lj1C1140T4' => 'lonja', 'Lj1g0005542' => 'lja', 'Lj2A16T71' => 'lonja', 'Lj2A428T27' => 'lonja', 'Lj2g0014308' => 'lja', 'Lj2P254T37' => 'lonja', 'Lj3g0018064' => 'lja', 'Lj3g0026111' => 'lja', 'Lj4A174T34' => 'lonja', 'Lj4C82T4' => 'lonja', 'Lj5g0019483' => 'lja', 'Lj6g0026671' => 'lja', 'Lsat_1_v5_gn_2_112481' => 'lsa', 'Lsat_1_v5_gn_2_98861' => 'lsa', 'Lsat_1_v5_gn_3_84301' => 'lsa', 'Lsat_1_v5_gn_4_158780' => 'lsa', 'Lsat_1_v5_gn_4_64361' => 'lsa', 'Lsat_1_v5_gn_6_106881' => 'lsa', 'Lsat_1_v5_gn_9_68460' => 'lsa', 'Manes.04G018200' => 'mes', 'Manes.07G098900' => 'mes', 'Manes.08G015100' => 'mes', 'Manes.08G073900' => 'mes', 'Manes.08G074800' => 'mes', 'Manes.08G075015' => 'mes', 'Manes.08G075355' => 'mes', 'Manes.08G075695' => 'mes', 'Manes.10G047300' => 'mes', 'Manes.11G147500' => 'mes', 'Manes.12G120700' => 'mes', 'Manes.18G054800' => 'mes', 'Manes.18G086601' => 'mes', 'Mapoly0060s0061' => 'mpo', 'MBI01_g45075_MAGBIO' => 'mbi', 'MBI07_g30982_MAGBIO' => 'mbi', 'MBI15_g06333_MAGBIO' => 'mbi', 'MBI15_g46854_MAGBIO' => 'mbi', 'MBI15_g46855_MAGBIO' => 'mbi', 'MBI16_g17834_MAGBIO' => 'mbi', 'MBI16_g36427_MAGBIO' => 'mbi', 'MBI16_g43728_MAGBIO' => 'mbi', 'MD01G1045900' => 'mdo', 'MD01G1107300' => 'mdo', 'MD03G1121000' => 'mdo', 'MD05G1364100' => 'mdo', 'MD07G1173100' => 'mdo', 'MD08G1207200' => 'mdo', 'MD10G1239000' => 'mdo', 'MD11G1139800' => 'mdo', 'MD15G1305700' => 'mdo', 'MD15G1391600' => 'mdo', 'Medtr1g094830' => 'mtr', 'Medtr2g027780' => 'mtr', 'Medtr2g094930' => 'mtr', 'Medtr2g094940' => 'mtr', 'Medtr2g100690' => 'mtr', 'Medtr3g111210' => 'mtr', 'Medtr4g058700' => 'mtr', 'Medtr5g030690' => 'mtr', 'Medtr5g430750' => 'mtr', 'Medtr6g055480' => 'mtr', 'Medtr8g016400' => 'mtr', 'Medtr8g067490' => 'mtr', 'Medtr8g085360' => 'mtr', 'MELO3C004903.2' => 'cme', 'MELO3C007990.2' => 'cme', 'MELO3C019807.2' => 'cme', 'MELO3C025784.2' => 'cme', 'Migut.F01896' => 'egut', 'Migut.F01897' => 'egut', 'Migut.F01898' => 'egut', 'Migut.F01899' => 'egut', 'Migut.F01900' => 'egut', 'Migut.F01901' => 'egut', 'Migut.F01902' => 'egut', 'Migut.F01903' => 'egut', 'Migut.F01904' => 'egut', 'Migut.F01905' => 'egut', 'Migut.F01906' => 'egut', 'Migut.H00299' => 'egut', 'Migut.H01638' => 'egut', 'Migut.L00446' => 'egut', 'Migut.M01477' => 'egut', 'Migut.M01949' => 'egut', 'Migut.O00440' => 'egut', 'MSTRG.14582' => 'ama', 'MSTRG.15332' => 'ama', 'MSTRG.16073' => 'ama', 'MSTRG.18674' => 'ama', 'MSTRG.21109' => 'ama', 'MSTRG.23630' => 'ama', 'MSTRG.24418' => 'ama', 'MSTRG.27475' => 'ama', 'MSTRG.9126' => 'ama', 'MSTRG.9168' => 'ama', 'Nitab4.5_0000071g0110' => 'nta', 'Nitab4.5_0000147g0140' => 'nta', 'Nitab4.5_0000265g0020' => 'nta', 'Nitab4.5_0000582g0240' => 'nta', 'Nitab4.5_0000602g0010' => 'nta', 'Nitab4.5_0001219g0160' => 'nta', 'Nitab4.5_0001312g0010' => 'nta', 'Nitab4.5_0001663g0260' => 'nta', 'Nitab4.5_0004212g0040' => 'nta', 'Nitab4.5_0005250g0010' => 'nta', 'Nitab4.5_0005501g0030' => 'nta', 'Nitab4.5_0006507g0040' => 'nta', 'Nitab4.5_0006532g0020' => 'nta', 'Nitab4.5_0008761g0010' => 'nta', 'Nn1g05769' => 'nnu', 'Nn1g07657' => 'nnu', 'Nn1g08307' => 'nnu', 'Nn2g10837' => 'nnu', 'Nn2g13131' => 'nnu', 'Nn5g29756' => 'nnu', 'Nn7g37921' => 'nnu', 'Oeu000487.1' => 'oeu', 'Oeu002985.1' => 'oeu', 'Oeu016937.1' => 'oeu', 'Oeu017923.1' => 'oeu', 'Oeu024995.1' => 'oeu', 'Oeu031338.1' => 'oeu', 'Oeu032434.1' => 'oeu', 'Oeu032819.1' => 'oeu', 'Oeu033864.1' => 'oeu', 'Oeu054767.1' => 'oeu', 'Oeu059815.1' => 'oeu', 'Oeu059824.1' => 'oeu', 'Oeu059826.1' => 'oeu', 'Oeu059827.1' => 'oeu', 'Oeu059828.1' => 'oeu', 'Oeu063140.2' => 'oeu', 'Os01g0640200' => 'osa', 'Os02g0619600' => 'osa', 'Os02g0806700' => 'osa', 'Os03g0142500' => 'osa', 'Os03g0403600' => 'osa', 'Os04g0101800' => 'osa', 'Os04g0266700' => 'osa', 'Os04g0508800' => 'osa', 'Os06g0578100' => 'osa', 'Os06g0578700' => 'osa', 'Os08g0126000' => 'osa', 'Os08g0126100' => 'osa', 'Os09g0298500' => 'osa', 'Os10g0464500' => 'osa', 'Os10g0464800' => 'osa', 'Os11g0650500' => 'osa', 'Os11g0650600' => 'osa', 'Os11g0679000' => 'osa', 'Os11g0687100' => 'osa', 'Os11g0687200' => 'osa', 'Os12g0203500' => 'osa', 'Os12g0431700' => 'osa', 'Peaxi162Scf00174g00118' => 'pax', 'Peaxi162Scf00174g00146' => 'pax', 'Peaxi162Scf00195g00027' => 'pax', 'Peaxi162Scf00267g00104' => 'pax', 'Peaxi162Scf00370g00110' => 'pax', 'Peaxi162Scf00563g00520' => 'pax', 'Peaxi162Scf00858g00315' => 'pax', 'Peaxi162Scf00948g00113' => 'pax', 'PGR004G1712' => 'pgr', 'PGR009G0005' => 'pgr', 'PGR031G0397' => 'pgr', 'PGR044G2673' => 'pgr', 'PGR102G0386' => 'pgr', 'PGSC0003DMG400006392' => 'stu', 'PGSC0003DMG400008091' => 'stu', 'PGSC0003DMG400021143' => 'stu', 'PGSC0003DMG400023339' => 'stu', 'PGSC0003DMG400027228' => 'stu', 'PGSC0003DMG400030617' => 'stu', 'PGSC0003DMG400035351' => 'stu', 'PGSC0003DMG400040738' => 'stu', 'PGSC0003DMG400041063' => 'stu', 'Phvul.002G140850' => 'pvu', 'Phvul.003G286100' => 'pvu', 'Phvul.005G133650' => 'pvu', 'Phvul.006G134900' => 'pvu', 'Phvul.007G095950' => 'pvu', 'Phvul.008G185000' => 'pvu', 'Phvul.009G146050' => 'pvu', 'Phvul.011G081250' => 'pvu', 'Potri.001G082150' => 'ptr', 'Potri.002G107902' => 'ptr', 'Potri.003G148400' => 'ptr', 'Potri.006G000900' => 'ptr', 'Potri.008G038450' => 'ptr', 'Potri.009G010350' => 'ptr', 'Potri.010G223766' => 'ptr', 'Potri.016G001300' => 'ptr', 'Prupe.1G540900' => 'ppe', 'Prupe.4G001000' => 'ppe', 'Prupe.4G105400' => 'ppe', 'Prupe.6G210600' => 'ppe', 'Psat1g171440' => 'psa', 'Psat2g135120' => 'psa', 'Psat4g120640' => 'psa', 'Psat5g017720' => 'psa', 'Psat5g278840' => 'psa', 'Psat6g111680' => 'psa', 'Psat6g182720' => 'psa', 'Psat7g192160' => 'psa', 'PSO063G5618' => 'pso', 'PSO170G5477' => 'pso', 'PSO210G0156' => 'pso', 'PSO210G0337' => 'pso', 'PSO210G0819' => 'pso', 'PSO210G1471' => 'pso', 'PSO210G2143' => 'pso', 'PSO210G2561' => 'pso', 'PSO210G3614' => 'pso', 'PSO210G3958' => 'pso', 'PSO210G4141' => 'pso', 'PSO210G4590' => 'pso', 'PSO210G5028' => 'pso', 'PSO210G5103' => 'pso', 'PSO210G5278' => 'pso', 'PSO210G5318' => 'pso', 'PSO210G6285' => 'pso', 'PSO210G6774' => 'pso', 'PSO339G2239' => 'pso', 'PSO339G5826' => 'pso', 'PSO421G0633' => 'pso', 'PSO541G0573' => 'pso', 'PSO541G4737' => 'pso', 'PSO675G2057' => 'pso', 'PSO675G2341' => 'pso', 'PSO675G2344' => 'pso', 'PSO675G2563' => 'pso', 'PSO675G3359' => 'pso', 'PSO675G4964' => 'pso', 'PSO675G5347' => 'pso', 'PSO675G7016' => 'pso', 'PSO675G7415' => 'pso', 'PSO675G8183' => 'pso', 'PSO675G8554' => 'pso', 'PSO724G0208' => 'pso', 'PSO724G0259' => 'pso', 'PSO761G0165' => 'pso', 'PSO801G0395' => 'pso', 'PSO832G2992' => 'pso', 'QL01p021482' => 'qlo', 'QL05p066232' => 'qlo', 'QL06p037603' => 'qlo', 'QL08p055460' => 'qlo', 'QL12p040148' => 'qlo', 'RcHm_v2.0_Chr1g0363051' => 'rch', 'RcHm_v2.0_Chr2g0109851' => 'rch', 'RcHm_v2.0_Chr5g0000121' => 'rch', 'RcHm_v2.0_Chr5g0018981' => 'rch', 'RcHm_v2.0_Chr5g0018991' => 'rch', 'RcHm_v2.0_Chr5g0019101' => 'rch', 'RcHm_v2.0_Chr5g0019111' => 'rch', 'RcHm_v2.0_Chr5g0019121' => 'rch', 'RcHm_v2.0_Chr5g0019151' => 'rch', 'RcHm_v2.0_Chr5g0019161' => 'rch', 'RcHm_v2.0_Chr5g0019171' => 'rch', 'RcHm_v2.0_Chr5g0019181' => 'rch', 'RcHm_v2.0_Chr5g0019201' => 'rch', 'RcHm_v2.0_Chr5g0058461' => 'rch', 'RcHm_v2.0_Chr7g0233091' => 'rch', 'Rhsim01G0215300' => 'rsi', 'Rhsim03G0119200' => 'rsi', 'Rhsim06G0068900' => 'rsi', 'Rhsim09G0151100' => 'rsi', 'Rhsim10G0081900' => 'rsi', 'Rhsim13G0096100' => 'rsi', 'Sabra01G0059000' => 'sbr', 'Sabra02G0084800' => 'sbr', 'Sabra03G0108100' => 'sbr', 'Sabra06G0001100' => 'sbr', 'Sabra08G0026100' => 'sbr', 'Sabra09G0006400' => 'sbr', 'Sabra10G0173200' => 'sbr', 'Sabra16G0007500' => 'sbr', 'SalBow3G3724' => 'sbo', 'Sc02g0008390' => 'sci', 'Sc05g0004780' => 'sci', 'Sc06g0010340' => 'sci', 'Sc07g0000310' => 'sci', 'Sc09g0006210' => 'sci', 'Sc16g0001250' => 'sci', 'Sc26g0004340' => 'sci', 'Sed0001659' => 'sed', 'Sed0004175' => 'sed', 'Sed0009761' => 'sed', 'Sed0009832' => 'sed', 'Sed0011559' => 'sed', 'Sed0012194' => 'sed', 'Sed0015414' => 'sed', 'Sed0019621' => 'sed', 'Sed0025356' => 'sed', 'SEGI_01276' => 'sgi', 'SEGI_06263' => 'sgi', 'SEGI_07907' => 'sgi', 'SEGI_09902' => 'sgi', 'SEGI_14092' => 'sgi', 'SEGI_36495' => 'sgi', 'SGA_v2.0_scaffold104G30098' => 'sas', 'SGA_v2.0_scaffold104G30100' => 'sas', 'SGA_v2.0_scaffold13G06510' => 'sas', 'SGA_v2.0_scaffold180G39641' => 'sas', 'SGA_v2.0_scaffold239G43985' => 'sas', 'SGA_v2.0_scaffold28G11873' => 'sas', 'SGA_v2.0_scaffold62G21361' => 'sas', 'SGA_v2.0_scaffold62G21406' => 'sas', 'SGA_v2.0_scaffold67G22587' => 'sas', 'SHI08935' => 'shi', 'SHI12172' => 'shi', 'SMO146G0396' => 'smo', 'SMO199G0026' => 'smo', 'SMO199G0030' => 'smo', 'Solyc02g030310.1' => 'sly', 'Solyc02g030420.1' => 'sly', 'Solyc02g032340.2' => 'sly', 'Solyc02g032355.1' => 'sly', 'Solyc02g069470.4' => 'sly', 'Solyc02g091710.3' => 'sly', 'Solyc04g015280.3' => 'sly', 'Solyc04g076860.3' => 'sly', 'Solyc05g056140.4' => 'sly', 'Solyc11g069600.2' => 'sly', 'Sopen00g011380' => 'spe', 'Sopen02g010720' => 'spe', 'Sopen02g010760' => 'spe', 'Sopen02g018610' => 'spe', 'Sopen02g036320' => 'spe', 'Sopen04g007360' => 'spe', 'Sopen05g034550' => 'spe', 'Sopen11g028310' => 'spe', 'Sp1g06680' => 'spa', 'Sp1g06690' => 'spa', 'Sp2g28760' => 'spa', 'Sp4g01700' => 'spa', 'Sp4g21340' => 'spa', 'Sp6g10790' => 'spa', 'Sp6g22280' => 'spa', 'Sp7g35530' => 'spa', 'TAR369G0091' => 'tar', 'TAR369G0667' => 'tar', 'TAR376G0011' => 'tar', 'TAR381G1484' => 'tar', 'TAR381G1698' => 'tar', 'TAR624G1286' => 'tar', 'TAR626G1666' => 'tar', 'TAR628G1300' => 'tar', 'TAR633G1802' => 'tar', 'THA.LOC104798382' => 'tha', 'THA.LOC104799509' => 'tha', 'THA.LOC104799843' => 'tha', 'THA.LOC104800329' => 'tha', 'THA.LOC104801519' => 'tha', 'THA.LOC104806910' => 'tha', 'THA.LOC104807655' => 'tha', 'THA.LOC104810864' => 'tha', 'THA.LOC104824927' => 'tha', 'THA.LOC104825233' => 'tha', 'THA.LOC104827353' => 'tha', 'Thecc.01G082600' => 'tca', 'Thecc.06G135200' => 'tca', 'Thecc.06G244100' => 'tca', 'Thecc.08G077600' => 'tca', 'Thecc.09G343700' => 'tca', 'Thecc.10G076100' => 'tca', 'Thhalv10000890m.g' => 'esa', 'Thhalv10003723m.g' => 'esa', 'TPR.G10482' => 'tpr', 'TPR.G11488' => 'tpr', 'TPR.G12475' => 'tpr', 'TPR.G15269' => 'tpr', 'TPR.G1959' => 'tpr', 'TPR.G26170' => 'tpr', 'TPR.G27446' => 'tpr', 'TPR.G6128' => 'tpr', 'TPR.G7423' => 'tpr', 'TWI09G0115' => 'twi', 'TWI09G1605' => 'twi', 'TWI12G0065' => 'twi', 'TWI15G0665' => 'twi', 'TWI38G1664' => 'twi', 'TWI56G0456' => 'twi', 'TWI63G0715' => 'twi', 'TWI63G1056' => 'twi', 'TWI74G1480' => 'twi', 'TWI75G0723' => 'twi', 'TWI79G0883' => 'twi', 'unitig_0.g483' => 'ugi', 'unitig_26.g10046' => 'ugi', 'unitig_37.g12167' => 'ugi', 'unitig_37.g12309' => 'ugi', 'unitig_60.g25528' => 'ugi', 'unitig_60.g25529' => 'ugi', 'unitig_744.g24112' => 'ugi', 'unitig_747.g21985' => 'ugi', 'unitig_749.g13688' => 'ugi', 'unitig_899.g15004' => 'ugi', 'unitig_92.g28104' => 'ugi', 'vmacro03213' => 'vma', 'vmacro03587' => 'vma', 'vmacro04865' => 'vma', 'vmacro07062' => 'vma', 'vmacro07851' => 'vma', 'vmacro07853' => 'vma', 'vmacro07882' => 'vma', 'vmacro07883' => 'vma', 'vmacro14423' => 'vma', 'vmacro21369' => 'vma', 'VMungo0251G2661' => 'vmu', 'VMungo0251G2874' => 'vmu', 'VMungo0540G0948' => 'vmu', 'VMungo0647G1869' => 'vmu', 'VMungo0720G1139' => 'vmu', 'VMungo1080G0051' => 'vmu', 'VMungo1127G0220' => 'vmu', 'VMungo1215G1735' => 'vmu', 'VMungo1309G2183' => 'vmu', 'Zm00001eb003450' => 'zma', 'Zm00001eb003460' => 'zma', 'Zm00001eb046280' => 'zma', 'Zm00001eb046300' => 'zma', 'Zm00001eb089670' => 'zma', 'Zm00001eb111700' => 'zma', 'Zm00001eb184920' => 'zma', 'Zm00001eb190060' => 'zma', 'Zm00001eb191920' => 'zma', 'Zm00001eb222260' => 'zma', 'Zm00001eb247390' => 'zma', 'Zm00001eb258330' => 'zma', 'Zm00001eb263160' => 'zma', 'Zm00001eb263200' => 'zma', 'Zm00001eb269910' => 'zma', 'Zm00001eb269940' => 'zma', 'Zm00001eb269950' => 'zma', 'Zm00001eb269960' => 'zma', 'Zm00001eb281420' => 'zma', 'Zm00001eb309310' => 'zma', 'Zm00001eb335240' => 'zma', 'Zm00001eb378050' => 'zma', 'Zm00001eb378080' => 'zma', 'Zm00001eb411520' => 'zma', 'Zm00001eb418460' => 'zma', 'Zm00001eb418990' => 'zma', 'Zm00001eb426300' => 'zma' ) $gf_id = 'HOM05D000620' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000620' ) $data_identifier = 'HOM05D000620' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 11, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 15, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 15, 'cfa' => (int) 7, 'ccl' => (int) 2, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 9, 'cpa' => (int) 6, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 20, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 15, 'eca' => (int) 10, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 32, 'fve' => (int) 16, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 3, 'vvi' => (int) 7, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 14, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 7, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 10, 'mtr' => (int) 13, 'cme' => (int) 4, 'egut' => (int) 17, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 16, 'osa' => (int) 22, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 15, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 9, 'sgi' => (int) 6, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 10, 'spe' => (int) 8, 'spa' => (int) 8, 'tar' => (int) 9, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 2, 'tpr' => (int) 9, 'twi' => (int) 11, 'ugi' => (int) 11, 'vma' => (int) 10, 'vmu' => (int) 9, 'zma' => (int) 27 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426300' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1